NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0190267_10025997

Scaffold Ga0190267_10025997


Overview

Basic Information
Taxon OID3300019767 Open in IMG/M
Scaffold IDGa0190267_10025997 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1785
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)35.0244Long. (o)-111.7363Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004218Metagenome / Metatranscriptome448Y
F019902Metagenome / Metatranscriptome227Y
F029350Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0190267_100259971F029350AGGAGMTSGYTPGSMPEKDQPGFDQILGALREGLNEDPRLKGMPAEEVARRLVRHGHLEGEPPPPLVAEALEGLEAEEQSLQNDELYSEDANPT
Ga0190267_100259972F004218AGGAVAKTYELDTMISPSSLLARAKKAAYANGATLLGDERSGRFSHEMAKGEYRMVGQKVIVTVTDKHWLLPWAVVEIRLRELLASA
Ga0190267_100259973F019902GAGMLRENVLREIASRAVRDPDFLRKARQNLDSTLARHGYDLTDEEMRLVEDLRRRTVGKSGEQLARALSDGFVGSTGTPPVLPASANWRGSGPSRPARPGG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.