NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190267_11270945

Scaffold Ga0190267_11270945


Overview

Basic Information
Taxon OID3300019767 Open in IMG/M
Scaffold IDGa0190267_11270945 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)546
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)35.0244Long. (o)-111.7363Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036565Metagenome169Y
F040490Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0190267_112709451F036565GGAGGMDFDFPAPYDHEVPRRIGEARCQLSPEGVAVLEGLIAESGSLEDVIVAMESLPASDRHVLVDVSRFFAEAYD
Ga0190267_112709452F040490AGGAGGMDTPESSAPHVHPSTEEQDHPHACLNGYIYLGYTVFDEETGEEVERIEALPCRRCAEESR

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