Scaffold Ga0181360

Basic Information
Taxon OID	3300019781 Open in IMG/M
Scaffold ID	Ga0181360_100007 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019781 Open in IMG/M

Scaffold ID

Ga0181360_100007 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Sp13.ND.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24417
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (32.56%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

24417

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (32.56%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F011473	Metagenome	290	Y
F011827	Metagenome	286	Y
F016246	Metagenome	248	Y
F016922	Metagenome	243	Y
F026794	Metagenome	196	Y
F037053	Metagenome	168	Y
F057879	Metagenome	135	Y
F075699	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181360_10000711	F037053	N/A	MTTPTVDDIIADLESRGLGWSLDNTGRLIEARVWDWPHVIGRYRPAKTEPLAKMLAAACYEVDWTAYPVKA
Ga0181360_10000712	F009945	GAG	MSTALAIFKRTHGVATHRKAGAGHRYPWMAFFHRIRMKDGTVRWFSELANEYSMDTLECRNKVADADTEEEACKLLAKRNGFPWPADEPKKRKAKP
Ga0181360_10000714	F026794	GGA	MMHSGDNPGSISERDLRVTASQLRAAENDAREATRGEMTFDELDRRYADPISREEAVALRPFFEAFCEGRTVWAYELKERYGRPMPTWTPITEWDAHFRRMCLSLEYRTDNPFATE
Ga0181360_10000715	F057879	N/A	MTIPSTEPTNPRDTVRPAPVPEGGQQEPESPFAGASQVPPWEL
Ga0181360_10000719	F016922	AGGAGG	MNHIRISSRAIQCRADAEGATEYAIRYGGHDFIVTAHSRLEAGIAVEYYRPDEPDAAQPELLP
Ga0181360_10000722	F011473	N/A	MNWKKYITDPLTSRPRRGAISRIAALLGTHYGCVKRMFDGVWTPTDEEANGLRAIVASRTNLAPKKRSDAGKKRGEYRKRAVAKTGVAAPQLKALRSAKKTALK
Ga0181360_1000073	F011827	N/A	MRNRTHSANTHLNYRSRWKERDAVSSKRHGETCDDIRIACHLWLLKRCPGYAEEHAEHVEQYARSLGRA
Ga0181360_10000740	F075699	N/A	VAEERLYHSIVADAACAAGRHVVCGRTLKPFCLLHSFQLSQLENKLWTGEEPEPHELSIAAQICASDEPVLDFAEDAAPFDMETELAKWRAYTRLCASSPMMKERITATVTLNDYGAPVELWCTAFLMTKLRIDERRAWRMPYGLAWWYVQAAHEQETGETYILTEEELAHMDEQSTPEALAAREEFDGNARWIVENVKDPASRGAMLKQLSEGTLAGDWRAEYV
Ga0181360_1000076	F016246	N/A	MTQLDMFPHLPRRLTHAEILAGFAELLRAVEAMEFWEPWP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181360_100007

Overview

Ecosystem & Geography

Associated Families

Sequences