NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181361_100087

Scaffold Ga0181361_100087


Overview

Basic Information
Taxon OID3300019783 Open in IMG/M
Scaffold IDGa0181361_100087 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3670
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002287Metagenome / Metatranscriptome574Y
F004838Metagenome / Metatranscriptome421Y
F025017Metagenome / Metatranscriptome203N
F025444Metagenome201N

Sequences

Protein IDFamilyRBSSequence
Ga0181361_1000871F025017N/AMANGINMISYRQGIRNKGFQVTVPTTGATQTLSLSG
Ga0181361_1000872F002287N/AMSQINKLAYVDQKLGAPSDGQQTTRILFSTIEAPGTTSGLIFFKTFQGLTNGQTNLTQNRLDSMESMVIKTIWLAQYNTAGILEDFGGKVQQTVSIILGNQQVVKSLPIQFNQGDTAQTFDRLHENAAVTTDTFNGVMFDSSYQNKMPVEIRLLTDIVIPPQVSFEVRIDSNAGVYGAGAVVCALSGYGKIFSAGNTF
Ga0181361_1000873F004838N/AMTAQDKILYVANKLGLTSLQNMQASTGAVYDVDTDLNGQIFTSASRHQNPSVTNLTQNEFEVNEALLVENIAFYVKGTTEIFNFQKIFGSNAVIVYSLIIGNKRVMVDTPIFGSGSPYTFATAGKQVVDMEGTQSTVFLPRHQTFMEGAGVLIPPQVQWYVEYRIFNSVTGAIITPSATSAIGCYLFGTRVLLNFNTSI
Ga0181361_1000876F025444N/AMYLQLAGLEPLDTALDPLAPGAPTYKYKNFYLGQSQDIILPDALFPPNVEGYAKALKDLGDLYGKYSKGKKTPADVVKKSNAGKTPGMSVIDPASLYLIAQGIYAGVQALSTVFRGQVTTAARQRITELYNGNNFNVQNLNRMTARQISDAITQIDNQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGSGFLTALPAWVLPAALGLGAVLILRGRK
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