NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181361_100245

Scaffold Ga0181361_100245


Overview

Basic Information
Taxon OID3300019783 Open in IMG/M
Scaffold IDGa0181361_100245 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.ND.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2814
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002287Metagenome / Metatranscriptome574Y
F004838Metagenome / Metatranscriptome421Y

Sequences

Protein IDFamilyRBSSequence
Ga0181361_1002455F004838N/AMALSAQDKILYVANKLGLSSLNLMQGSTGAVYDVDTDISGQIFSSASRHQNPSITNLTQNEFEVNEALLIENISFYVLDPATKDVSNFQVAYGSDAIIVYDLIIGNKRVMKDTPVFAVGTPYTFANTGNVVATVPNIGAVATVLPRHQTFMEGAGILIPPQVQFSLDYRVFNVVTGATIAVTDDLGAIGCYLFGTRVLLNFNTSI
Ga0181361_1002456F002287N/AMSQISKLGYVDSKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKTFQGLTNGQTNLTQNRLDSMESMVIKTITLYQLATSGRILNIGGSAQQTISIIVGNQQVVKNLPIQFNQGFTGQAFDRLHENGAADTDTTISGTKNQQTSQPVEIRLLTDIVIPPQVAFEVRLDSNQAVYGTGAVVCALSGYGKIFSAGNTF
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