NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000028

Scaffold Ga0181359_1000028


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000028 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)28461
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (77.55%)
Novel Protein Genes21 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Associated Families21

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F005702Metagenome392Y
F005846Metagenome388Y
F007164Metagenome / Metatranscriptome356Y
F010463Metagenome303N
F011284Metagenome292N
F012433Metagenome / Metatranscriptome280N
F023833Metagenome208Y
F024265Metagenome206N
F025739Metagenome / Metatranscriptome200Y
F027777Metagenome / Metatranscriptome193N
F033350Metagenome177N
F035218Metagenome / Metatranscriptome172Y
F045612Metagenome152Y
F074559Metagenome119N
F081046Metagenome114N
F086811Metagenome110N
F088509Metagenome109N
F093506Metagenome106Y
F100669Metagenome102Y
F104721Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100002810F086811N/AMISPQFKIEDALAAILAPISGLNVFTSNRRGARLFPFVTIQASLGAQQIIPYSGVFEVGVDIAYSDCATLTSQANFDSTYFDIFQKLYSDNNTLVNKVQDNVTDLKVFMGRITSQSPTIRADKRAWQRGLTLSFIVTPDENADGLREYDFSDALNSFYLGTI
Ga0181359_100002812F035218AGGAGGMALVKNPSNIDSFLFSTGRTRAFRVGMAGSYFKSAGVGATATGGNTLGFNLSINAGSAAAGTAKVGYFDPTAALMTASAGKIDYSKRIRFSIGGMMYIGSTNSVIRIVFGGTGNSVDAPAAGANGLTIKGFGAEFALQSGVIQARLIGFNASYLTPTSYTTLTNGFGLVASDNRFFGVVIESDGAGNIYLYGADSSINPNINIGQSPLLTLTGGPTNDTSTNRFGPEIQCSNNASVAPTASPSAILQSTYYLIDVQ
Ga0181359_100002813F045612GAGGMSSLKWLEAEGYIEKFYDNNGDLCVRICEGAEDCEV
Ga0181359_100002814F012433GAGGMSADQVADLRERLARIEERQTSIIQILERHTSELAQWTAKINSKVDTLERESHTIKTKLWLVALVSGAVFSTIWELIKVRVFPR
Ga0181359_100002817F104721N/AMQEKILYTRNIKLASVLATFGIPFRESEPMAVVEDADNGNKRSVTFFFTDLPNGLGGRLVELWEKGWSAITNYDDPLAYCRAVLENRERLLDAINNATPLVKKQFGKATLLVSKNASPELRKKLSKYL
Ga0181359_100002821F093506AGGAMATTIISNISSFDFEPDILTDNGRDGITSFQFSIVGGFSALNSSFSLGENISGVPDQPPGNFKVVRRNLSHIAGDVSNGLYRVQITGEGGTGDNSLFVLETSFQYQKEIATGLVTLGAESASFIQFSVQYVLEWLSPTVTITTNSQTEGVIEVQERVRELARLTPPQIIRNKPPDTPAGPSQPSRRITGPGIDLDATYIVGSSVENAGGLFRVRASAARGQVQGL
Ga0181359_100002826F025739AGGAMMKLLTIESSVIRRSILGFIATSFLLCGCVTTRPYDIGQVPNQDSITDYIMRWDKLDRTKATPEEYRQLFGQSLKTISRLVEENERLRKRLDQ
Ga0181359_100002828F011284AGCAGMTSEQGVEKTEEEVFTKKHDLHLTTLQMAAVESMERKYKKGVVEHGGTKLWEMPTARLVENAIEEATDQLTYLLTLRQQMHIVMELARDGCTDETLTNPRARECCHLIYTTLTGQSKPL
Ga0181359_10000283F003049AGGAMKNAKQIIGCRKSKKGEDTKGLGIIKFGKSRPDPTKYVKVDITYDEKAEKDLYECGMLALKHDKEAVIQYVIVKALTGYAKCKK
Ga0181359_100002830F074559AGGMKAQNPWQKLLQEHIKDKFAPPPPAGYHTREEVSKLWGKSMNTTSRMLNQMLEQKKVEMKRHPFIIPRKDHRVVRNLKIFKILPAKHPHK
Ga0181359_100002832F005846N/AMTSFPLPARPQASAVPAWHIEFKKDTAIEGKANGWRGLFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDIPNNKLLRFVRLAHHKINAIWEEMNFQNNKAGEVIWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW
Ga0181359_100002833F005702GAGGVIFGLVVFIGLFILQGLRLLGKHIDQQNYERRKFYLFVAAELDKMDKIVAEGNQPKEPKEPELVLPSKNWVGRN
Ga0181359_100002835F027777GAGGMSEEMPTFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQHKQ
Ga0181359_100002837F023833AGGAMKSHSELIQDILNDVRSKAADLERERCADLVQQLADGTEDAVITGILNEVVLAIRRLGDVSR
Ga0181359_100002838F033350AGGAGGMSAVDVEVPETKWSMLVWKTLKEKPHNDERVLMDIGGEVVVGRFIDGSFVSRSWGHSENDVWLWASWPKAPKW
Ga0181359_100002841F010463AGGCGGVNDLVLAATIHRVKCCEEKIAQFEQLISTLTAQMAHNRSELASKGLANLVMGTTTPLDIPRELRPTFGRYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSSGRGIK
Ga0181359_100002843F024265N/AMNEPFTSSEAKAKGILSDRYPGKEMAKLYAENRNQATIDMLRDAVFTLITNQIPTCTIAQVLRKTHGAIQYHLRCLEGDGKLKRRNKRCHWREAVEA
Ga0181359_100002848F007164AGGAMSEKQIGMELQRTVKALEKAKETAIEQMGQAIGLAADAGDILLSARTEGLDLDAIQNIAQINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSINQWTPAQRTQFVEEARPIVEAFKEAGGEL
Ga0181359_100002849F100669GAGGMTKGTHPKGICDLRKLLQKGQMRLTQAGSLIIGYLRKIGSLVRGVNDLGNFYFAKTPQNIPF
Ga0181359_10000287F081046GAGMTAKTIKYSQRLGDIIRCLPACKYLADQGHEVFVDCLPQYHGIFEMVSYAKAGSKGDVIDLEIWPNKYQEYRFSNKTWTEFVYAHPEINKADPTNILFDKLDNEPAKGLPEVYNMVAPFGISQGEKQDPLKIIVEARNKAGAYSFIVLAPEGFKISGLQTYTAPSVLEMAKAIRGAKEFYAINSAPMTIAAGVRKEKKVIFYPQKIEPFDKDNLFIWDSVELN
Ga0181359_10000289F088509N/AMTSIERQLEESLATALSGVSGVNIFKSDTEGARLLPSVVIQVSIGSEEIIPYSGVFRCPATITYSTRADTTTRAELDSKFNEILQVMYQSPNLASVLTTATLKVFLANVTSESPEIKSENRTWSKSLSLDISCTSI
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