NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000086

Scaffold Ga0181359_1000086


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000086 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)17986
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (78.38%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F020909Metagenome221Y
F024097Metagenome / Metatranscriptome207N
F025466Metagenome / Metatranscriptome201Y
F054668Metagenome / Metatranscriptome139Y
F058137Metagenome135Y
F096878Metagenome / Metatranscriptome104N
F101146Metagenome / Metatranscriptome102N
F104767Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100008610F058137GAGMCGVVMVGKKIRSVRVSDQVWAKAKAKAQSEGKSVSEVIVDFLKGYIK
Ga0181359_100008616F025466AGGAMMFDKVKLEAIAKTYLRAAAAAVVALYLADPNQPVKNYLAAGLAAVAGPVLKALDSKSTEFGRGSK
Ga0181359_100008620F054668AGGAGMGISTRQVTVTTSPTALVDATQEAEMVYLHSSSGTCFLGNSDVTTSTGYRMDNGDKLTVENKANGIWAITSSGTVIMQVMAIGK
Ga0181359_100008631F004344AGGGGGMDGLSIKVKTIDGVDKTFSLRPRIIVDFEQKYGKGLAKLIGEEQKLEHIYYLGWLALKSNGHIVKPFGPEFLDTLESVSLDSNPNFESTETV
Ga0181359_100008634F101146AGGAGMAYIVTSDREVCGKTAGDILTVKELQDAGVSAENLIAGNHIKASNTTQETPSIKTEIKEGATN
Ga0181359_100008637F104767AGAAGMREVADPNQGTDWCWFWDGPVNGEWIGEDLLFSRRIKSLGYPIHVNTSVILPHQKSFWLDESHHEAWKD
Ga0181359_10000864F024097N/AMKWLREHGVSAERLSKAGSADEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAHNYAIARGLKQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE
Ga0181359_10000865F096878N/AVAIYLEERDANLDLVEDVLAAVPMAHLESIESLLITDLKSSDAARMMDKARSAVPDLAIKLASVSESEALTLAEQLITAVKYARAMRSQPQGVKLELVK
Ga0181359_10000869F020909N/AMECRTGMERGWNNRMITKRGKKVRAIAFAVGIIVIWQVAMNLWWVGIDAPNAEFLGWCWGSMSECVVL
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