NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000100

Scaffold Ga0181359_1000100


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000100 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)16638
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016149Metagenome / Metatranscriptome249Y
F032583Metagenome179Y
F064523Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100010012F016149AGGAGGMARWVAPDRGVKETVIDGKSYFTDRQGIYNVENKSHQKAMKAEGFFEASLNPISSDDRKRGFSCVECGFEGWFRKCGRCGTESQDIPRDGE
Ga0181359_10001006F064523N/AMADRFGWTPEQVDNLPANAADWLMAIARTVDEVKVERMKD
Ga0181359_10001007F032583AGGAGGMSKEVTLPSGAKVTLKDPSTLRVKDRKNVMRSADNAVGGDLTKALALGDALIAMLVESWTFDLIPPSIKLESLDELTMADYDALVEHTKDAQKHLFPSLAETPETEADPKAPGENSNA
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