NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1000655

Scaffold Ga0181359_1000655


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1000655 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)8086
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014131Metagenome265Y
F039039Metagenome164Y
F051914Metagenome143Y
F078390Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100065510F014131N/AMKCIIKLGNIVEGLIEVITLGHGKTLAGWIASKLGYASCGCEERKIYLNKLCGCKSGIKL
Ga0181359_100065517F078390N/AMSKELTLERLAKAIIETKKEVMYLKAELEKVQAYLREQHKLKKQLNNK
Ga0181359_100065521F039039N/AFNSTLYDLQLKIEAQQRQINELRQLVLQLSKDINSLQLEVSYLSNNKYKGL
Ga0181359_10006553F051914GAGGMNTDINIDYQYAYFNFNWTWIRDKQIILKGNSNGGMLIIADSEGNTLRMYGYERIG
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