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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019784 Open in IMG/M |
| Scaffold ID | Ga0181359_1001486 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6301 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (7.69%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014956 | Metagenome / Metatranscriptome | 258 | Y |
| F021732 | Metagenome / Metatranscriptome | 217 | Y |
| F031483 | Metagenome | 182 | N |
| F033801 | Metagenome | 176 | Y |
| F052398 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181359_10014861 | F033801 | N/A | MKYEIKWKSGRIITDAESIEDAIKKFKELGIEVEDKEISIASFG |
| Ga0181359_10014864 | F031483 | N/A | MNILKGKVKYTAGKVFEGQYGASINAAITLENGTDIRVYGKPDDEKLKALQKDDVVTIIHDGKSYKVAFDMVTANELPEKAQTPTEGNNVQQTANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAGATIFIQIGKFF |
| Ga0181359_10014865 | F014956 | GGA | MKIQDFALNASITVCPSHIVEPIHLRKWWRQRGVGELEKYFVSGKAIHYNEEIDWKKISDHKKSLWYDSQNFQIQMGHEYSKRQG |
| Ga0181359_10014867 | F021732 | N/A | MSITKFTVKCCLDKKLGHFVHVIFFSGFGLYGQTKPHSPDDNIEVHGWTFEPHDLDLQLYPVINRFNLMPLVDENELDWVILKD |
| Ga0181359_10014869 | F052398 | N/A | MNLPAIAMTIEEKIQDIQLVIDNRDKRLFKTGIVESLPKINQVVKQILPLYGIDASPEHLVELTQFITTYKLIAVDEIKLAFEKFARQELNIDEHKLYGKVDLAAIGRILTAYITWRQRVYFNVDMEDEKKRGKMEEEQRQVEAKRKFYAEFPEMLSGFKGESYEDVPVYWYDAAMEAGLIGYAEGEKRAIWEEAQDIASKQKIQADTYIDFKTQLHRAAEENKKRAVIIAQKLAVWRIVLNRI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |