Scaffold Ga0181359_1002767

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181359_1002767

Scaffold Ga0181359_1002767

Overview

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1002767 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	5196
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F025214	Metagenome	202	Y
F086584	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100276710	F005737	AGGA	MFEIEKYTKPTNWASVALWVVSIAAIMVVALDVFYWRA
Ga0181359_100276711	F086584	GGAGG	MLHDGEEGEFCEFIDSVGEVRVCWTWCEGDDWDTDGYFDVFVFEGKNDITYDIPKDELNWLEKQVPIYAGYEPPSRQRVARAINGYLNKTF
Ga0181359_10027674	F025214	GAGG	MTTNPYWTEDGRAKNLALLTSTERCEMLETLRQTELRDWIRRYRNKQRELGKQEAQAWWETVKLGIKKRRGQVGVDTLIALMEKQRDVNRL

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