NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1002971

Scaffold Ga0181359_1002971


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1002971 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)5077
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F069824Metagenome / Metatranscriptome123N
F081081Metagenome114Y
F102572Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100297114F069824N/AMPDFESRPCFSEQEYLWENHMKKGADCDVLDVDNFVEYLGKAVESKKGAEKWELYRQYAEKGDWHNFGRAIYFLVHDHIEDELL
Ga0181359_10029713F081081N/AMNNGYQKLIHQCAVRQLCKWRKEWGLQKFRKYLSNHKFDTNLLSDFQDQWLKGNKGEWGKWI
Ga0181359_10029715F102572N/AMPDDHKQKALEAIVEHRKYWAAKGTDWEFIPHASTWLNQERYFDEIVIEQKEKKKEVIGWHRSDEGTLAKGREVGCQPYPGESMDQYRQRLHRRILELEGQM
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