NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1003413

Scaffold Ga0181359_1003413


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1003413 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4862
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005775Metagenome390N
F008615Metagenome / Metatranscriptome330N
F026828Metagenome196Y
F094995Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100341310F026828N/AMTEELIFNAIAFLAGLVIKRPDFVQKIISKLFAKKDK
Ga0181359_10034134F094995N/AMVLKEKYTTLQRTLDAMQTQIEDSLSFARNFVPRGETPRSLFTLLKQHTTYRHDPPGVELLQSMPTLMHNNFYGIPGAGDCDCFVIAAVSSCVVEKIPVRIVVVGNTRKNPTHVYCEVLDGGRWTAFDLCSPFYGETKKYRYLSRINVN
Ga0181359_10034135F005775AGGAMAKQRPIYTKAQHQIVTPAFVEKKIQLHKTIKWNTKDGRELFLMASGSVTRYVPKSEHNSQAPMGFFNLQMGHYNKISIHTRDFAQLADVFEQITLFLKSNAGKLDQVVTTELDTYTTHHLKNLLNTNEQP
Ga0181359_10034138F008615N/AMNTINTFGAKMFGRFIRKGWHISFTDSYQDRVCVIPPDRLDAKHLFGIYIPVLRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFAAWIGDLLRNPEKFT
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