NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1003587

Scaffold Ga0181359_1003587


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1003587 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4787
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002052Metagenome / Metatranscriptome599Y
F005701Metagenome / Metatranscriptome392Y
F021758Metagenome / Metatranscriptome217Y
F075696Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100358710F075696AGGAMQNTKSTLDSLMLQLQAVLDEAGLDEHETIQNAFNALACALDEEIIA
Ga0181359_100358711F005701AGGAMFTNCIAYAKLVYNKRLKAYKVQFAFNVHKKLVGTDYKYIFPVQAKCNYVSGDLLAENIQEEVQRTVAYAQQSLRTTNIVFVE
Ga0181359_100358713F002052AGGAMSRLYTFVFTVECASTGFPDLGRAEEMIHLSMQELVYDDEFVSALDEKESVTIQVNLVK
Ga0181359_100358714F021758AGAAGGMKVIKLDRRYSGYGTWTHRTNGDYWQGEEARAKGLMGFYDMRCYMTQMNGPGCFIHEAWAIKKHGQAVPDWAWDTDGNVFFRDSALVNFTLAKDRWL
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