NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1004130

Scaffold Ga0181359_1004130


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1004130 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4567
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037203Metagenome168Y
F042218Metagenome158Y
F078404Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10041302F042218AGGMLRSPSIKALKTLFGENAPRAKALLRMNRDQLLRTPIGAARAAECYNPPSTQDIRMECLNALGDFYGVESLNTKKGECLYLNAGDTYTPTLVRFGSSYRITTWGDIAERHCTI
Ga0181359_10041303F037203N/AMKGHIMQNRFQTLSEALHSEGISHMWNWRPIAYGETVSLTYDDGTRYGHYVSVYRDETGLYERPVHYRRG
Ga0181359_10041306F078404GGAGMNRQHYKPEPAPRPWAGALLAILIGLALAFILLEYL
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