NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1004216

Scaffold Ga0181359_1004216


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1004216 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4542
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009066Metagenome323Y
F014487Metagenome / Metatranscriptome262Y
F026867Metagenome196Y
F029043Metagenome189Y
F043823Metagenome155N
F048834Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100421610F026867N/AMGLGRLNDTAMKLRQENRALSLRQLGAAYGLGYVRIKQMRELSGFPLIAGKIMPSDFDQWRLTQTGLSLPRPADRLRSAVDTTRELKSTSGSRVSWRQIANTLKDEAWLHELREGNGSSA
Ga0181359_10042162F014487GGAMRLILLAFLFSSCSPRPAENTGLPNYDMMQAAEDAGKAPSK
Ga0181359_10042163F029043AGGMSKDEQACQALQYLLDEGFISLGYIDGKPAVYLTTSLLEARKAITKLVSNDSADWWK
Ga0181359_10042166F009066GGAGMSPEHEKHLASILSDLVKDVDAKYRKGQDQHGGALWRRPVWKDAWEECLDLCTYLHTLRMQLSVIADLALLGASDESVAASSSRESCRQILAVLEGFPSAVDKK
Ga0181359_10042168F048834AGGAGGMAIPGVDWAAALDAYVAGDREEVVPPGWFTKIDIAKLWGKTPVYTNKVLTRMIKSGGAERKVFSIRIKICDRGSKVGHCRRVPHYRLTPAKSRKS
Ga0181359_10042169F043823N/AMKKVKTNLTIDPKVKRNGERMARKSGLSLSAYITTLLVKELAKEKRC
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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