NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1004367

Scaffold Ga0181359_1004367


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1004367 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4482
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023107Metagenome / Metatranscriptome211Y
F043392Metagenome / Metatranscriptome156N
F066766Metagenome / Metatranscriptome126N
F091353Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10043674F043392AGTAGGMEIVDKYYHANGSAVPFIAALVDDPADGDTKIVIMFDEKDFTAVLSLDSLLRDEDVSARNNGYHGDKYEKLREDLWDSFLN
Ga0181359_10043675F091353GGAMIKTSIDLFDETCNAIAGGELDRQLIPLKKLIEERLSHLRVDADIKDFVVGDKVVLNDKCGTKYLIGEEGTVVAIRRSKISISFDKPKGRFARTNSKGEIYSAHVVVPISIVDKI
Ga0181359_10043676F023107AGGMDNILPSRTVMFVGDYFTLMTTIVLDEKLRNENETDNDFAVRVASVFINEYYGFDVASVANSIGVVDEGGMVEEDD
Ga0181359_10043677F066766AGGAMEAEKTLARLVKDNYGGSAVEYLVARLSSVVTESQLKVLIDYEKGVNG
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