NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1006218

Scaffold Ga0181359_1006218


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1006218 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3969
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003213Metagenome500Y
F006843Metagenome363Y
F013413Metagenome271N
F055728Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10062181F006843AGGMSNFMDGYVDVATRLKLAFEKYPDLRIQETAREIIEMPDKSCFIRCTVTIWRTGDDPIPCIATACEIYPGR
Ga0181359_10062183F055728N/AMRRSYDPSYGSRQQLQDSSERNMIIARERDKLKTENQELQDQIKELKAIIKYMTEGE
Ga0181359_10062185F013413AGGAMTENEYEETFDLRMEKEHQETLRRMQVFRLIGEQISKMPDTPPKVLEIEVRYLMGIISELETRIKDLESEVRRFELLVTRGN
Ga0181359_10062188F003213GAGGMTTKKINRSHRQIGDQTTKGGLLGIMIYVMSRNNVDPVLIGLIVPVAASVLAWVSTKIGDPDLACMFIPDAKKEV
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