NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1008357

Scaffold Ga0181359_1008357


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1008357 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3573
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024558Metagenome / Metatranscriptome205Y
F035768Metagenome / Metatranscriptome171Y
F039639Metagenome / Metatranscriptome163Y
F061859Metagenome / Metatranscriptome131Y
F062765Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100835710F062765GGAMEWYRARGLTQKQTKTATQDTMFYNTGDTYTTEDITTNYSCGRIDVRGIPNEPYGDELGVPPMLSTDWHALGDWLWDIQTISVWTLPDLITAYEQHNPKITWDTHDR
Ga0181359_10083572F024558AGGAMIVILYTEDFEPIIPIDLPLWLLDRLEKEGGVRVAVNRPSGFTEEQIPVGNLECEAPTVRIRYEKLRWRDDTLKTILVTPDEELALTLNPEWLPGQRAPLQTYVAAMRKLHEQLIKQIRKNQD
Ga0181359_10083575F039639AGGAGMNIDREFVKWFYEDAYPEQGSNRRQVYSTTQNSQNINVIDYWMREAFKAGAEAATHGYEVNALEQFEAFNINRNYPL
Ga0181359_10083577F061859GGAMTIEITLIILGLALAVCYVVLEYQKLAKPPYQEPVKPDMAEQWVAATKADTLDNIDNWNAKVGDKIWHKEAVAELEPTPINPQAAWPFPRGPSP
Ga0181359_10083578F035768AGGAMKITIEDRLLAAYTAQRLRLRDREDEDYRARVEVKAFERIILDRVHRNLRLGLDKGTNVDLDV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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