NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1009550

Scaffold Ga0181359_1009550


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1009550 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3405
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011484Metagenome290Y
F040536Metagenome161N
F055552Metagenome138Y
F090097Metagenome108Y
F093483Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_100955012F055552AGGAGMNKEYWERKVDLCRKIGIEQLMAGDIKNGTRNLKRMVRAMEEVNLIKANEGEDKSAADMWADLIASGVMLTSEGESK
Ga0181359_100955014F040536AGGAGMDELGKVIRFHPVKSPLSLFYEVIEPDGETRWGGERAFDAISWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGVN
Ga0181359_100955016F090097GAGGMTIRSKRVSGKQAIHYRNYRRARDRALTRLSQAYPETYKELLELEKVNDSTSGAKWIDIDGDHSLIVVTGTGSRREGTIIESAGYFAEGEGER
Ga0181359_10095502F093483N/AMTIERVRHSGAIVVSALVEWEGVKWLESATYYGYTIKQAKASYIDSCKRLNYTIERG
Ga0181359_10095507F011484GGAGMSELEQFLNVEAEWVLERLSTGTESNDRNYYQGRLDQLAQVRRLLKLPQLMIEREGE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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