NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1010763

Scaffold Ga0181359_1010763


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1010763 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3261
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029757Metagenome187N
F047683Metagenome149N
F103267Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10107635F029757AGGAMLTLSDINTASNSKDGDIYSDLHKDVYGFRPRYVRFVSLEEFDADFERLVKQLDIQETEEAASQARNFTKFVARIEETMQLVQGTDRERAIEIIADAEGISKDEFDFYGLERLEYLFGLKFGSIAKWVSE
Ga0181359_10107636F047683AGGAMTFTVEQIESTHNPAVTRNNYYPVRAYWVPIELREQVLAAYRETNTRVRLRYRGPRAVSIGREMTRNDKTTYLRSRTRAMQDCLIADATHFTVYDYTAR
Ga0181359_10107637F103267GGAGGMEVELFAFPTMENPKAVENTFCNLLNAQRRGESLPVEALDWMDTANNWLMESK
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