NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1010903

Scaffold Ga0181359_1010903


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1010903 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3246
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025679Metagenome / Metatranscriptome200Y
F032572Metagenome / Metatranscriptome179N
F035215Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10109031F035215AGGAGGMKSSEQIVKEINDRIVEYKTLQVEHDNNQDAVNLLESAIHELENLLEWINE
Ga0181359_10109033F025679AGGMTKTFKIGETALGGTIKVVIPKTLTNIRIDVISTNHITRSSCDAPYLINQYIYYSFDRIRIERDLFQIVSGYWSDQILAWINKSWQSQLAKI
Ga0181359_10109034F032572N/AMNSTYQYIANYINKPTIFCYILDRVVNNNPYLFGGEYNEKLLNKKVWMAKQVFPHCEPTQYTYFKTFKEAKDTLNRWGAKWERV
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