NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1011370

Scaffold Ga0181359_1011370


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1011370 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3196
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034850Metagenome173Y
F043829Metagenome155Y
F091307Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10113703F091307N/AMKKQVTTNVRIPADWLKVSINDIMIMVTATINDVEDYVDVQVREILMPGYHCLNILPEFYSSFYELVEQKCMDAFTFKMDSEYDHEYYCDYAL
Ga0181359_10113706F043829N/AMENNALPKWGDLNINERHKLIGELIDAMIYSGHAVNHLQVSVENFRMLGYIRSVILPKNDEQ
Ga0181359_10113708F034850AGGAMEEDLVLGECEEVEEVEEVVGYTYPEYISSSVEVLTMLETANPMTREEVEKMQELKRLCIEMLEYSVKSMHEMLFNNDI
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