NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1015315

Scaffold Ga0181359_1015315


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1015315 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2833
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021096Metagenome / Metatranscriptome220N
F060705Metagenome / Metatranscriptome132N
F064517Metagenome / Metatranscriptome128N
F098891Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10153151F064517AGCAGMARTTTENIYYGRSQQITADGCFAISFFRPSTSNPVNVAGIPLEAGQTLSIKQNVGDEDWSTYEIVFGTGAATNEMYVTKIMPLTRG
Ga0181359_10153153F098891N/AMSLAQTALLASAIRPSSSSSPAVKPTGIVESISQKPIQWLIVTGVVVYFGSKFLGKLVKTGEERRTETAETSTSTDNAFSFKSFLAQKIPTGTKLLTASGAYQNAKQVHDALNVYLSEDEDIAIGVFTSLPSKTQVAQVAQAFYNYYKKDILYYLKNGNKTIDFGTGGLSDSEYARVIDNVSRKPKF
Ga0181359_10153154F060705N/AMAISSLNFIISQFESEKYRYFAVYDEDGDRVYTQNDLIDVEAAINKLRSFFKDNQGYFTIRVFSKKLSDKNNLIARDNSTIAKYNVEVTTPVLPMGVNGLSGMGGNSMLPPDDPRSNAPNMFQLLGAMSQVEQNMKLMEKDHAHYREMKELQDRIAKMEENEGKSKGMGAIVDRLGEQFSDPNVLLGLISGVSQLFKKEAVAPMHGVRSEDMMPMNGIDEQVINNISTRREKMIGSVNFLMQHDANFPENISKLAELAKNKPAIYSMAVSYLNNL
Ga0181359_10153155F021096N/AIINYFLTNNLCKDYTAIEGEMSTLVTLSFPNTGDYQRSYYFASQTMLDGQNATITAIEIVPSTELTILPTGQTNVDSSILPNGVLYVSNLKRQIIATLPLYGLQRSPNNGKPTFTYFNDQVWQNCYVEFTSTGFATPTTPLTFRVYYVPKIKN
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