NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181359_1019216

Scaffold Ga0181359_1019216


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1019216 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2572
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F003182Metagenome / Metatranscriptome502Y
F009883Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10192163F003182AGGAGMHILQFDCSICSKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIAEMSL
Ga0181359_10192164F000903AGGAGGMIAAIQHCHDRSADHSSRIVKNLSWFEYVAQMGESMLAEYVVAKKLGYDYTPGITWDKSKADVGDHIEVKWSANPASNLWIQESDRHDRDIAVLVTGSSPKMHIVGWMPVAIAKKPRYKNPSQNNWSVPQINLQPIETLQRSNYAHSAI
Ga0181359_10192165F000403N/AMSDYVEMIYPQQMMARLMCNGEIVEEYKIGQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR
Ga0181359_10192166F001897GGAMAAFMDGYEGNKERTDRWIATFPQGRLEAHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAYGYLAAYPDKMKRWMVEDSCTSALMRVMALVMGNTEKATKEVMSMVKSEKPAADYDYWTTKHGDVPSYKTSAEAEEAGTPSFGSSDVGPTGWAVNGVPMCAHGTMRWNQSKPDAPKPWAGYFCSEKVKEKQCKPTWYAMTSDGTFKHQV
Ga0181359_10192167F009883GGAGMNELSIVITMVIAGALWSVMAYSVGFKEGERQGYTRGRAVARHAVSADRKVW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.