NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1020752

Scaffold Ga0181359_1020752


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1020752 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2487
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013413Metagenome271N
F014620Metagenome261N
F037730Metagenome167Y
F088868Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10207521F088868N/APVYKHGDCSWLPALALQAGWQVEHLEQLTQVALREAGCCPNRRGGDSVDKDCNIIGVSDKTHRSDTGALQINGVNFDLSRNPHAPICLQMGVCTQEPLLDPLTNLKAGKLLFDYWQKAAGNGWIPWDMCNRTRTCNDD
Ga0181359_10207522F013413GAGMTENEYNETFDMQMEREHQQTLKRMQEFRLIGEQISKMPDTPPKVLEIEVRYLMGIISELETRIKDLESEARRLEMLLTRAN
Ga0181359_10207523F014620N/AMFSPSIGLGGTFERPAINRDIVIIAREAKQTSVDAAIKAKPKTGKKRQRVHAYLLGRPATDEEIETALNMSGNTVRPTRGTLVKDGHVIDSGIRRLTRAGNQAIVWRCV
Ga0181359_10207525F037730GAGGMTDFNEAQLTNQYLIDQLVIARKRNEVLEAHIATLMEDLKVSSQLLNACTAYLS

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