Scaffold Ga0181359_1022338

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181359_1022338

Scaffold Ga0181359_1022338

Overview

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1022338 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	2403
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F091274	Metagenome / Metatranscriptome	107	Y
F093196	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10223383	F091274	AGG	MEYVSISQAIKAAADLNTPSTEYLDNFLPAYRKYHKRQNIRRAVCKIGSSLAVFVVACLCYASINNHNKLDIDTASGGEMAQNNTHGKQVVFEGDVKEVTDFIRKHVKEKTQTIGLKEHFDADVWGVYVEGEEKFRFYYQCLGHGRYSVFVINE
Ga0181359_10223384	F093196	N/A	MADIQSLLSMNKIPLVVGICLAVSIFYTVYSPHSSMVKQHIDTYGMDFEYVTPEGSCFTQNIEPIGHESHKYILSLGKPAKPTNTEEPLYVMVGYTMKQVRVRYRSNALTSNNL

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