NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1023207

Scaffold Ga0181359_1023207


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1023207 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2362
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F023592Metagenome / Metatranscriptome209Y
F029049Metagenome / Metatranscriptome189Y
F030767Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10232073F030767GAGMAYKTKCRLCGKVTEHIERVVTENLPPYVKTLQCVKCGVMGVVMLEDVNDA
Ga0181359_10232074F029049GAGGVAVCQVPSVAKVILDRSQEITSHRVGLERTIIRNADPTDASNYGQSYKNWHELVWQESESCGAEIAVASYFGDYSFTPAIDNAHDTADVGDNIEVKWTKHANGHLILQNRGEGRPNDVAILVTGFSPCYMLLGWMPVHMAKQAKYKHPYQNNYWVPRSNLFEMQYLKRSNYGV
Ga0181359_10232076F007029AGGAGMGFLDNYEDVNARIKRFRAEFPSGRLVAYIESFDIDKGTILVRAEAYREYEDNVPSAIDYAFGNVATYPQNMRKWMVEDTITSAYGRVIGLLTPSLEHSSRPTAQDMQKVDTLPADADPWSTKASIEDMATMATAVLDLSTQLGGELVAEAPRCPHGTMVWATGTAKATGKPWAAYKCTERIRANQCNPVWQVMTSSGWKPQV
Ga0181359_10232077F023592N/AIGLNKGRNMNSLDILIGLGACGLGFLFMVLGYSVGFKHGHGEGFIRGRAIAQALKDKELI
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