NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1026415

Scaffold Ga0181359_1026415


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1026415 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2226
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015467Metagenome254Y
F023588Metagenome209N
F035297Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10264152F023588GAGMVLVTWADAHSGVATWTPIDSLDKDEMIVYTCGFLLATIDGGKPDHITVYQSRTMEDDIDHVLHIPCAMVRKIAICTPDQLG
Ga0181359_10264153F015467N/AMRNGAQNSNLHPRSTRVGLGSFAPDWSLNSPHTFLLGCGLYTHQPAKIGQDMRRITATIVTTVLLIIGIGTAHAAQAPKPTHSPSTTRSEVIPKDHQPNIKFRHGDISWLPQLAAEAGWPPHTWKRLGQIILRESGGCPNRRGGDIVNKNCEVTGHDGSNHRSDTSLLQINGVNYNPKRNKYAPICTQMKICTQEPLLDALTNLKAGLLLFRVTGSDWSPWIVPEGGW
Ga0181359_10264154F035297AGGAGGMEPLTNRIKAGWIIAFTMIGWLFFLLPMTGEDIPEGQPTPISNQAWITWIIINFVMLILVHLLISKEHRANKRAIKTLKRVAKARLNHPTHR
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