NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1026961

Scaffold Ga0181359_1026961


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1026961 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2206
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003067Metagenome / Metatranscriptome509Y
F007027Metagenome359Y
F012572Metagenome279N
F046904Metagenome150N
F060716Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10269611F060716N/AVSGITDPKVLANAFIAGLIGPVLKAVAPNEKQLGIGAK
Ga0181359_10269612F003067AGGVSQAQAYIALALGIATLSGLMAGLVRHLVKYYLSELRDDGNGGHNLKGRVERIELRVDKIYELLLEDRLSK
Ga0181359_10269613F046904AGGMNSLDLMIVGMVCLFMGLFIWASYEMGYKVGLGEGYLRGRNIAKALKEAEAKR
Ga0181359_10269615F012572AGGMSDNYELINLQEMTGKLFVNGELAAEYKVEQCDKCALVAQLDKFGYQKNSFENVIWFCKGCR
Ga0181359_10269617F007027AGGMSELIRFECRSCNKITNQLERIVADNLPPNVKVLQCRVCSKMSVCLLVACADA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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