NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1035361

Scaffold Ga0181359_1035361


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1035361 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1934
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006112Metagenome / Metatranscriptome381Y
F009334Metagenome / Metatranscriptome319Y
F071983Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10353613F009334GGAGMNSTMVHDVEVKVGDNVAFKSDIEQWARIVEIKKTYAGVALVLENKHGFSGDYIGGETITTVLARDCWAD
Ga0181359_10353614F006112AGGAGMKQNWTLYIYKRDKRCKAGERLFSTTVWPGLDKDGMNRTIVELYPLYKATEGWRMEYVPTMKTVRNLMSGVDIQIPHDTPRSCDPSSELYWSM
Ga0181359_10353616F071983N/ANVYLKTGGLDMTWEHRVIAIVRGRAEAYDFERGLVKELQPTLNDQYM
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