NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1046463

Scaffold Ga0181359_1046463


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1046463 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1678
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001900Metagenome / Metatranscriptome620Y
F073145Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10464631F073145AGGAGGMAQSVGNARNILVGASPLFLSTIDVNDADYIANAEAGVAIASAANTVGVPAFATGVSYTTSLNAVTQTAGLFGYRNVGFTNNGLQITYNPTYDSVTVDQLLDTAKLFKSAMEVMIATEMS
Ga0181359_10464632F000258GGAGGVTANYKLDAMLELRKYLWKELYTRDIFDENDYWSDNLNENIIPIIPVQQAPELNQFLSGKKHIVYDKIGMSYEDNWLICCEQIMFTVYSTSVADINEIRNYMTDEFRRMDSSAQDINKWTDLSNKFKFHSVYIADISPTAPSEELQGFFSSEIILEIKYSRITDDVGRFL
Ga0181359_10464633F001900N/AAQISAYVYYEAAVIAKLTTNKAFQNAFSKLIFDQINLDFGNYIDALARSKPKSLHHVYEWKKTGNKSARLFKLNKTGQVGLSFGINYSFLPSKSMVPASTGKRRHMFINKASIMEKGEPLVIRPKNADRLVFEIDGETVFMPKGASVTVKRPGGSGARNQFTLAHSRFFSGRLVNDSIKKSGFQRLFNSSMSKALGVPSDIKRVKYSFSANTIRSQADSALTLSFGGAM
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