NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1049073

Scaffold Ga0181359_1049073


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1049073 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1629
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F031793Metagenome / Metatranscriptome181Y
F052978Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10490731F052978N/AMSFSIPTQIEKDIIRGKATYETFQTGIGGQTVIPVTPNSYIVIFGYDFSPAGGGLTQVAPAPTGIQNLPTSISYFGTQQVSFYNANNFNPFIHHVPINMTALGVTGEGLDVAYQVDNTPIARQVYIISGSDVAITVGLIRSLTLPGIVYEAIPVTPSTPGFMTYGGDTQTPGIQSTLSPIGALTFTQPQINNYNQYGFAAPFPANAANQAFWIPNALTGLTEPSNFISTFGVDFDLNAVCHYYLNVHYALYNRAIPEQLG
Ga0181359_10490732F000710N/AMANGINMISYRQGIRNKGFQITVPTTGATQTLSLSGLAKAFEGIILSATTTAAPQTIINGMQLLVTLTINNDVVVDSVVAHELGASTGTGISTGFPAFIPFPRALTGQDTIILRVTNSSGASQLLNATVYYKNEI
Ga0181359_10490733F031793N/ATFGAAGGGFELQQTLSIIVGNQQVVKNLPIQFNQGVNGQSYDRLHTNAGAPFGGAGSRLLQSVQPIEIRLLTDIVIPPQVSFEVRIDSTNAEYGTGAVVCALSGYGKIFSAGNTF
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