NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1053107

Scaffold Ga0181359_1053107


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1053107 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1561
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F001043Metagenome / Metatranscriptome794Y
F071228Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10531071F000450AGGCGGMGDRANFGFVQPNGQTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISNIIADQWNMETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEHTDGRNPLNKVRGMNNKALFTMDLTSFCEKYALERLLVV
Ga0181359_10531072F001043AGGAGMSEYKDGFNDGYKFAREEIIEKLREIDINDIDSWMLDRLSDMIEGNKL
Ga0181359_10531073F000311GGAMYFELTAPDRLSMEMAYWDAQIIGLDPTAMSPLTFNVGTGSIEKVSKIRDKHNLIESYTSDYEPTGYMRR
Ga0181359_10531074F071228N/AVTPAVPATYNPSALVQYKVIQGEDVTYPISKVTDLEWDLQQGRTNRESLDNLKSTVRELEELLIELYNPNYTKEEALKQIAELFGFELTKTVTVTGTIAFEVTVQVPLDEMDDFDAHYKLGDELSLTSYGSDVEVGDWTIENTDVDWD
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