NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1059640

Scaffold Ga0181359_1059640


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1059640 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1462
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005878Metagenome / Metatranscriptome387Y
F018948Metagenome / Metatranscriptome232Y
F085644Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10596403F085644N/AMAKPHSLKYIKQLLEWGFDKEFIARDMGVNLASLEVRLNRAKKREQDGNQGSESETSSD
Ga0181359_10596405F005878N/AMDENRIRWQVGVSEVINEMHPFKCGPCKKVTPHHYITKYESEIEPDAWVWLMECQNCFEQRLFDPIDRVISREDEITRCDQCGNYKMKAAKCRICKIADGQERIKERYWNGNSTLERFIDADI
Ga0181359_10596406F018948N/AEFVKEQRPNDPEPIVWDVSAIAEELGAEVIDEIPICNHGPMILKQGSKEGKEYRGWVCTERDKSRQCPAKWMKIGSDGKWAFQK
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