NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1060753

Scaffold Ga0181359_1060753


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1060753 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1447
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016812Metagenome244Y
F034183Metagenome175Y
F043402Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10607532F016812AGGAMNTLFPELIIEEDEAMFSSNLFKLYKLDERCGKLEAPNFRVLYLKDKKTQIHISNHFNSPTCIITYYNIIDKSCVDARTISKKLFNKIHDHYFNIKRKIF
Ga0181359_10607533F034183AGGMNKLKKLAENINEEEAALLFQLMLSAFETANLQKTQYTNEDLPDESSLMVNVELDTRNVPSAVIEKLLGLLK
Ga0181359_10607534F043402N/AMIDKFKELVLSLDEKETNNIITLLTLLLESWEDDKINLYSEIQDFELTTIYKVLNLFNEQTEEAS
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