NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1070270

Scaffold Ga0181359_1070270


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1070270 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1327
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001538Metagenome / Metatranscriptome674Y
F002099Metagenome / Metatranscriptome593Y
F034828Metagenome / Metatranscriptome173Y
F058793Metagenome / Metatranscriptome134N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10702701F034828GGAMVTKKPPAKVAPVKRRAPKAEQTINVSVAAPVPVKTEAKKDDSTVGKIIGLIEWVDNPFKLFTVILLGFLVFAGYFAWDSRQVILHAITSQDKMPQLAKQENLLAPARSLMKDVDGLVVLIHKANLATNSRTTVLALNADGSREKAMEGTVTSLFNASADRNAAMVAMLNNEVLCEEFNP
Ga0181359_10702702F001538GGAGVIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEMNKANELAKQKQVQLQDLAFAIYTKKAAQERLRMEIFQNRKLDLYA
Ga0181359_10702703F002099N/AVRWLIALVLILSLHSTGKDLCSVREFYGIAYTIHNPSERHQQMTMWLTNHQHLCKSTDFVVIWNNLSEWAGTADSALLRHKVIQGYKNALEREKK
Ga0181359_10702704F058793N/AMDETEARLNSHEQVCTLRYEMLCSRLKRLENVIMAASGVMLTGMGGIIFAMMK
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