NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1070586

Scaffold Ga0181359_1070586


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1070586 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1324
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010236Metagenome / Metatranscriptome306Y
F024783Metagenome204Y
F036672Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10705861F036672N/AFHALLWTIAASVTTILTLSGAIQRVVIWLTVGALVLHLIGALNKKEDKS
Ga0181359_10705862F010236AGAAGMKKFQDVAGRIVAVFLSSALAIVGGSAVIAPELEIWKSAVLAGFAACATVVQKLAQASLDGNLTMEEINDSFGVKKK
Ga0181359_10705864F024783N/AMMDWGIVLASLITAVGGAMTTLMMVMRKENTQDHAKVVDALDTLSGNVDKIGTKLDGHIDWHLKGVPNGKVSTGNQSPRTKRRVKD
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