NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1079733

Scaffold Ga0181359_1079733


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1079733 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1229
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F012975Metagenome / Metatranscriptome275Y
F073544Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10797331F000671GAGGMEKILCYSCNKSKNKLSVRKSILIPINLLMCETCITAKFEPRWIIILSGRQLGPEAVKEFIVKKRY
Ga0181359_10797332F073544GGAGGVREYYEVIKVVFIHAERVYGSVESLGIYASKVKYQKDGIEIEEVLENDEFTIMDEIVFEHIEESN
Ga0181359_10797333F000473AGGAMEFINKDRDHFKHGVNEWTGEPNKPVFYTQEMAKKIREIKKPVMSLQMDIVKYPEFLAIRLYEDNFLQYEGIKKEIVIDYVGKVKKLIESYGVRCELEGVPSARILRSN
Ga0181359_10797335F012975N/ALDRKEMLNLTLKGVEVFIQRSKTKSQESYWDNYDLLIWKETPGGFTHIKGMFRKDQWGVAERIAANEQGIWKLPIKYVKHFK
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