NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1085780

Scaffold Ga0181359_1085780


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1085780 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1173
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014956Metagenome / Metatranscriptome258Y
F031483Metagenome182N
F041648Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_10857801F031483N/AMNILKGRVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDEKLKALQKDDVVTIIHDGKSYKVAFDMVTANDLPEKVQTPTEANNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAA
Ga0181359_10857802F014956AGCAGMKIQEFALNASITICPSHIVEPIHLRKWWRRRGVGELEKYFVSGKAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGNEYSKRTS
Ga0181359_10857803F041648N/AMNFLTGKIDTLPNTLTDNALTRYYELRIKYLEGEKERLSNEARADYLITLDFWIYAQRIIETYVMFHKDAPHEHYLDLLKTILKNLESHNEKAEDTAINRLRLEVVTRCNEAIVKCEQITAAR
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