NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1113002

Scaffold Ga0181359_1113002


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1113002 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)981
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F010081Metagenome / Metatranscriptome308Y
F013524Metagenome / Metatranscriptome270Y
F042296Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_11130022F013524N/AMKTNKEVVNRLREFTQNNCNTTLDPKLCEDIRYLCDEVERFGVQMLLMNEYGDEDYITIQKYKSKLEKCQAKLSNYEPF
Ga0181359_11130023F042296N/AMNLFKSIIKWCGVIVYAGFLATVAYAATLPEPIKVYLIISSRGGEYTIEKVYLKKENAEKYRDMFKDSHNYSVEEKELTE
Ga0181359_11130024F007859N/AMKSLLIATLLFTGCTSGMYLRYSYNRALETLPKCSTVHAINNRYITYSMIEQSTNNVYIIYTNYYRAYYTIDGDIIKTTKN
Ga0181359_11130025F010081N/AMKEQIDSIIKKYCLKMQEVDKTKSIPMTVKELDVIVYSMYRELYGLRDIRASNYNLNSF
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