NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1119908

Scaffold Ga0181359_1119908


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1119908 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)942
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F010081Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_11199082F010081N/AMQDKINDIITEYSEKMRVVDKTKSIPMIVKDLDHIVYDMYRQLYGLRDIRSDNYCLNTFTADNKKGHCS
Ga0181359_11199083F007859N/AMKNLLIILLLCTGCTSGMYLRYSYNRALENLPLCSRVHAINNDYITYSMIENSTNSVYVIHTNYYRAYYNMGGKIIKTTPNK
Ga0181359_11199084F008688N/ANKIMLGSLAAILLTAMTIEPPKIKVYLIMSYRGNDLAIEKVYLKKGNAEKYRDMYKDSHNYSVEEKELTE
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