NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1132560

Scaffold Ga0181359_1132560


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1132560 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)877
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004838Metagenome / Metatranscriptome421Y
F041159Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_11325601F041159N/AMASQIQKLSYVDSKLGAPSSGQQTTRILFNTIEAPGTTSSLVFFKSFQGLTNGQTNLTQNKLDSMESMV
Ga0181359_11325602F004838N/AMITAQDKILHVANKLGLTSLKDMQASTGAVYDVDTDLAGQIFSSATRHQNPTVTNLTDNQFEVNEALLVENIAFYVRDAAGLTFNFQRVYGSNAVIVFDLIIGNKRVMKDTPIFAAGTPYTFANVGTSTVAFGEGSTTAFIPRHQVYMEGVGVLIPPQVQWYVEYRVFNVVTGAIIVPTAATAIGCYLFGTKVLLNFNTSI
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