NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182022_1105800

Scaffold Ga0182022_1105800


Overview

Basic Information
Taxon OID3300019785 Open in IMG/M
Scaffold IDGa0182022_1105800 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)640
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F075570Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0182022_11058001F000451N/ASGSRKARFVYSPYTATEMQGFAQVLADSIRARIQSGQNIYDQAAAPLKPGKPGRRGYPDYKAARGLRPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEAMPGRRQTASQIAFYNNQRERQWGVSPRDRQAVLSVMLNYRPLVTLQDMSQGAYFRGLRQFGFGQYLNSIPRAA
Ga0182022_11058002F075570AGGMADQAERVILEAEDQVTPVVGQANAGLDSFEKKAESAHG
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