NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182022_1125726

Scaffold Ga0182022_1125726


Overview

Basic Information
Taxon OID3300019785 Open in IMG/M
Scaffold IDGa0182022_1125726 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1156
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002448Metagenome / Metatranscriptome558Y
F010139Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0182022_11257262F002448GGAMINPKTLLAEWVTALQSLPNLVDALGGDGGQIQFYTENAIVFGQPTQNNIRLAILSMPPGSVMIAWHGSGPGRLGNALVFVHDFSLYLRAPEDADVGYEDLFNWIVNDIPAGGSLRMLHVQVDANCEPMDFYLPSARRNTVVISADGATFEYFEVPVRLIESFNP
Ga0182022_11257263F010139GGAGMKVFMKSPQGDETKEVEATSAELTPFMAAGWHQVPAPESRQPAPPAEEKQ
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Institute for Fundamental Biomedical Research
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