NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182025_1113025

Scaffold Ga0182025_1113025


Overview

Basic Information
Taxon OID3300019786 Open in IMG/M
Scaffold IDGa0182025_1113025 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1091
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F025071Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0182025_11130251F001473N/AWCCRFILRVEAMESEYQTVGQMYERLRLMIRQRNDTGFRLAVTDAVLEPRNPFEPANKRRPKSVVAITLILALVLALIFLYFSFHHAR
Ga0182025_11130253F025071GAGGMIQHSENSRREMTNAEAGVVGAVLGFGLIALLLYLAVERYHIRKEQLAEAGLYLFVIAAAVIAPVLRKFTTRGKRNKRPPFVIPARKDERAIESAWNQNAVLLGYDMDETPW

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