NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182025_1344976

Scaffold Ga0182025_1344976


Overview

Basic Information
Taxon OID3300019786 Open in IMG/M
Scaffold IDGa0182025_1344976 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1530
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015014Metagenome / Metatranscriptome258Y
F016839Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0182025_13449762F015014N/AMANCIRCGRQLPGFTFGKKICQWCVQHEAYQRGEIVEDAKQPVMRTPWVRRGESTISLTQIIFGINAAVFLGMALSGSTIMEFSTQETSSGAPTGDHSHWRANGGDC
Ga0182025_13449763F016839GGAGGMFSIIFTWLIVAWGALACIYMLRCAWSRFPRRDVDADDVIPFLYPVDISLAESILDPAAEFECRWRLGPRRFREAQRKRMRLYLELTRRMAHNARVLVEYADAEKHSPDPRRVSLASALQENAIGVRLYSLLTGIKLRFWLLLRADILKSMPVLAHLRTTGEIDGLQTYSALKTAAAAAFIQFAPDEQDSLFRNL
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