NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182031_1403394

Scaffold Ga0182031_1403394


Overview

Basic Information
Taxon OID3300019787 Open in IMG/M
Scaffold IDGa0182031_1403394 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2336
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F075570Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0182031_14033946F000451N/AMARFQTVLKRARFVYSPYTASEMQGFAQVLADSIRARIQSGQNIYDQAAAPLKPGLSGRRGYPDYKSARGLKPIRDWTWSGHTLRCLKVLTANENRAAIGFLDEVLSGRRQTASQIAAFNNRREAQWGVSPHDRRMVLAAFQARPFVMLKAA
Ga0182031_14033947F075570AGGMADQAERVILEAEDQVSPVVDKANAGLDRFEKQAESSHGKVIRISDQTEPASNV

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