NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182028_1407468

Scaffold Ga0182028_1407468


Overview

Basic Information
Taxon OID3300019788 Open in IMG/M
Scaffold IDGa0182028_1407468 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1662
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Stordalen
CoordinatesLat. (o)68.35Long. (o)19.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002261Metagenome / Metatranscriptome577Y
F003186Metagenome / Metatranscriptome502N
F010139Metagenome / Metatranscriptome308Y

Sequences

Protein IDFamilyRBSSequence
Ga0182028_14074682F010139AGGAGMNSVFMRSPEGEVREVEATTEKLTILMSAGWHQVPAPAAAQKPVVVAEEEEQHG
Ga0182028_14074683F003186N/AVINPKTILGEWVTALQSCPDLVTAIGGDGNNIRAFMEGLANDNNLRLAILQMPPGSILVAWNGTTPRRLTGGALHFAHRFSLYLRAPEQESTATYADLFWLLVSARPTGAPSWESLLHLQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0182028_14074684F002261GGAMPNWPSIEAFVDGVMLQTFGEPVVYQPVQAGVAHGNAFTVTAIRHLRAREESGATANFEEISVNPTDFANPPAKGDWVTAWGVQYVVTTVRQPDAYGMLNLALLQRS
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