NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137408_1240707

Scaffold Ga0137408_1240707


Overview

Basic Information
Taxon OID3300019789 Open in IMG/M
Scaffold IDGa0137408_1240707 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4767
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003496Metagenome / Metatranscriptome483Y
F043663Metagenome / Metatranscriptome156Y
F067562Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0137408_12407071F067562N/ASQRPVKSFRYRQRSIVPLLAKAVVAKDFPGNCTGDPRMFVQLISLCMLQLPLPEKIPMLKRSHHDSTQISVG
Ga0137408_12407072F043663AGGGGGMRTQFDILKKDRKGMFQWLEAVNDIETAKGRLLQLSTESPEEFVAFRGIDLQVVAISKDSSVVDLN
Ga0137408_12407074F003496AGGAGGMSATQPSKELRVFCHEHHVKMRLDESLLNSEGDPTKTLAYACTEPDCLVHYNIYRGYFILNQNGNTNELDMVPSVRCLHDGTPMYLAEIDLDRKGFRLWICPQCDGRRTNEEGLIGLASQGIQDVSGKSSLEP
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